recipe mlst-cge

Multi Locus Sequence Typing (MLST) determine the ST from an assembled genome or from a set of reads.

Homepage:

https://bitbucket.org/genomicepidemiology/mlst

License:

APACHE / APACHE-2.0

Recipe:

/mlst-cge/meta.yaml

package mlst-cge

(downloads) docker_mlst-cge

Versions:

2.0.9-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mlst-cge

and update with:

conda update mlst-cge

or use the docker container:

docker pull quay.io/biocontainers/mlst-cge:<tag>

(see mlst-cge/tags for valid values for <tag>)

Notes

MLST requires a database that can be downloaded with download-db.sh.

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