recipe mm2plus

Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)

Homepage:

https://github.com/at-cg/mm2-plus

License:

MIT

Recipe:

/mm2plus/meta.yaml

Links:

doi: 10.1101/2024.11.25.625328

package mm2plus

(downloads) docker_mm2plus

versions:

1.0-0

depends _openmp_mutex:

>=4.5

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mm2plus

and update with::

   mamba update mm2plus

To create a new environment, run:

mamba create --name myenvname mm2plus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mm2plus:<tag>

(see `mm2plus/tags`_ for valid values for ``<tag>``)

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