recipe mmlong2

An all-in-one genome-centric metagenomics workflow using long reads

Homepage:

https://github.com/Serka-M/mmlong2

License:

GPL-3.0-only

Recipe:

/mmlong2/meta.yaml

Links:

doi: 10.5281/zenodo.11563692

package mmlong2

versions:

1.1.0-0

depends ncbi-amrfinderplus:

depends pigz:

depends pv:

depends singularity:

3.8.6.*

depends snakemake:

8.2.3.*

depends tar:

depends yq:

depends zenodo_get:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mmlong2

and update with::

   mamba update mmlong2

To create a new environment, run:

mamba create --name myenvname mmlong2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mmlong2:<tag>

(see `mmlong2/tags`_ for valid values for ``<tag>``)

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