recipe mmquant

RNA-Seq quantification tool, with special handling on multi-mapping reads.

Homepage:

https://bitbucket.org/mzytnicki/multi-mapping-counter/

License:

GPL3/LGPL3

Recipe:

/mmquant/meta.yaml

package mmquant

versions:

1.0.9-0,  1.0.7-0,  1.0.6-0,  1.0.5-2,  1.0.5-1,  1.0.5-0,  1.0.4-1,  1.0.4-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends make:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mmquant

and update with::

   mamba update mmquant

To create a new environment, run:

mamba create --name myenvname mmquant

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mmquant:<tag>

(see `mmquant/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mmquant/README.html)