recipe mmseqs2-server

Server for MMseqs2, Foldseek and ColabFold

Homepage:

https://github.com/soedinglab/MMseqs2-App

License:

GPLv3

Recipe:

/mmseqs2-server/meta.yaml

Links:

doi: 10.1093/bioinformatics/bty1057, biotools: mmseqs2

package mmseqs2-server

(downloads) docker_mmseqs2-server

versions:

8.c4b9644-1,  8.c4b9644-0

depends foldseek:

depends mmseqs2:

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mmseqs2-server

and update with::

   mamba update mmseqs2-server

To create a new environment, run:

mamba create --name myenvname mmseqs2-server

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mmseqs2-server:<tag>

(see `mmseqs2-server/tags`_ for valid values for ``<tag>``)

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Link to this page

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