recipe mmseqs2

MMseqs2: ultra fast and sensitive sequence search and clustering suite

Homepage:

https://github.com/soedinglab/mmseqs2

License:

GPLv3

Recipe:

/mmseqs2/meta.yaml

Links:

doi: 10.1038/nbt.3988, doi: 10.1038/s41467-018-04964-5, doi: 10.1093/bioinformatics/bty1057, doi: 10.1101/2020.11.27.401018, biotools: mmseqs2, biotools: linclust

package mmseqs2

Versions:

14.7e284-2,  14.7e284-1,  14.7e284-0,  13.45111-2,  13.45111-1,  13.45111-0,  12.113e3-2,  12.113e3-1,  12.113e3-0, 

14.7e284-2,  14.7e284-1,  14.7e284-0,  13.45111-2,  13.45111-1,  13.45111-0,  12.113e3-2,  12.113e3-1,  12.113e3-0,  11.e1a1c-0,  10.6d92c-0,  9.d36de-0,  8.fac81-1,  7.4e23d-1,  6.f5a1c-1,  5.9375b-1,  4.bff50-1,  4.0b8cc-1,  3.be8f6-1,  3.be8f6-0,  2.23394-0

Depends:

• _openmp_mutex >=4.5

• aria2

• bzip2 >=1.0.8,<2.0a0

• gawk

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• perl >=5.32.1,<5.33.0a0 *_perl5

• wget

• zlib

Required By:

• mgcplotter

• orthofinder

• pharokka

• treesapp

• opfi

• genomad

• dram

• marvd2

• centreseq

• probeit

• sonicparanoid

• eggnog-mapper

• liftofftools

• ufcg

• super-focus

• vrhyme

• ppanggolin

• ezaai

• hypro

• motulizer

• seqscreen

• semibin

• enrichm

• netsyn

• captus

• panacota

• gemoma

• etoki

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mmseqs2

and update with:

conda update mmseqs2

or use the docker container:

docker pull quay.io/biocontainers/mmseqs2:<tag>

(see mmseqs2/tags for valid values for <tag>)

Download stats

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