recipe mobster

NGS tool for detecting MEI and gene retrotransposition events in WGS and WES data, see Thung et al. Genome Biol. 2014 for more information.

Homepage

https://github.com/jyhehir/mobster

License

GPL3

Recipe

/mobster/meta.yaml

package mobster

(downloads) docker_mobster

Versions

0.2.4.1-1, 0.2.4.1-0, 0.2.3.1-0, 0.2.2-1, 0.2.2-0, 0.2.1-0

Depends mosaik

Depends openjdk

Depends python

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mobster

and update with:

conda update mobster

or use the docker container:

docker pull quay.io/biocontainers/mobster:<tag>

(see mobster/tags for valid values for <tag>)

Notes

After installation, mobster is available as command `mobster`. Further, you can convert mobster output to vcf with the command `mobster-to-vcf`.