recipe moca

Tool for motif conservation analysis

Homepage:

https://github.com/saketkc/moca

License:

Public-Domain / ISC License (ISCL)

Recipe:

/moca/meta.yaml

package moca

versions:

0.4.3-1,  0.4.3-0,  0.3.4-2,  0.3.4-0,  0.3.3-0,  0.2.9-0

depends biopython:

>=1.68

depends certifi:

>=2016.2.28

depends cffi:

>=1.9.1

depends click:

>=6.6

depends click-help-colors:

>=0.3

depends coverage:

>=4.2

depends cryptography:

>=1.7.1

depends cycler:

>=0.10.0

depends enum34:

>=1.1.6

depends functools32:

>=3.2.3.post2

depends future:

>=0.16.0

depends idna:

>=2.2

depends ipaddress:

>=1.0.18

depends matplotlib:

>=2.0.0

depends mmtf-python:

>=1.0.5

depends msgpack-python:

>=0.4.8

depends numpy:

>=1.11.3

depends olefile:

>=0.44

depends pandas:

>=0.19.2

depends patsy:

>=0.4.1

depends pillow:

>=4.0.0

depends py:

>=1.4.32

depends pyasn1:

>=0.1.9

depends pybedtools:

>=0.7.9

depends pybigwig:

>=0.2.8

depends pycairo:

>=1.10.0

depends pycparser:

>=2.17

depends pyparsing:

>=2.1.4

depends pysam:

>=0.9.1.4

depends pytest:

>=3.0.5

depends pytest-cov:

>=2.4.0

depends pytest-mpl:

>=0.5

depends python:

<3

depends python-dateutil:

>=2.3

depends pytz:

>=2016.10

depends pyyaml:

>=3.12

depends reportlab:

>=3.3.0

depends scipy:

>=0.18.1

depends seaborn:

>=0.7.1

depends six:

>=1.10.0

depends statsmodels:

>=0.6.1

depends subprocess32:

>=3.2.7

depends tqdm:

>=4.7.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install moca

and update with::

   mamba update moca

To create a new environment, run:

mamba create --name myenvname moca

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/moca:<tag>

(see `moca/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/moca/README.html)