recipe mockinbird

A fully automatic and reproducible PAR-CLIP analysis pipeline

Homepage

https://github.com/soedinglab/mockinbird

Documentation

http://wwwuser.gwdg.de/~compbiol/mockinbird/doc/

License

GPL3 / GPL-3

Recipe

/mockinbird/meta.yaml

package mockinbird

Versions

1.0.0a1-3, 1.0.0a1-2, 1.0.0a1-1, 1.0.0a1-0

Depends

• bowtie

• fastqc

• jinja2

• libgcc-ng >=7.3.0

• matplotlib

• numpy

• pandas

• pysam

• python >=3.6,<3.7.0a0

• pyyaml

• r-base

• r-lsd

• samtools

• scipy

• seaborn

• star

• xxmotif

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mockinbird

and update with:

conda update mockinbird

or use the docker container:

docker pull quay.io/biocontainers/mockinbird:<tag>

(see mockinbird/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mockinbird/README.html)