recipe mockinbird

A fully automatic and reproducible PAR-CLIP analysis pipeline

Homepage

https://github.com/soedinglab/mockinbird

Documentation

http://wwwuser.gwdg.de/~compbiol/mockinbird/doc/

License

GPL3 / GPL-3

Recipe

/mockinbird/meta.yaml

package mockinbird

(downloads) docker_mockinbird

Versions

1.0.0a1-2, 1.0.0a1-1, 1.0.0a1-0

Depends bowtie

Depends fastqc

Depends jinja2

Depends libgcc-ng

>=7.3.0

Depends matplotlib

Depends numpy

Depends pandas

Depends pysam

Depends python

>=3.6,<3.7.0a0

Depends pyyaml

Depends r-base

Depends r-lsd

Depends samtools

Depends scipy

Depends seaborn

Depends star

Depends xxmotif

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mockinbird

and update with:

conda update mockinbird

or use the docker container:

docker pull quay.io/biocontainers/mockinbird:<tag>

(see mockinbird/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mockinbird/README.html)