recipe mokapot

Fast and flexible semi-supervised learning for peptide detection

Homepage:

https://github.com/wfondrie/mokapot

Documentation:

https://mokapot.readthedocs.io

License:

APACHE / Apache-2.0

Recipe:

/mokapot/meta.yaml

package mokapot

versions:

0.10.0-0,  0.9.1-0,  0.9.0-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-2,  0.8.0-1,  0.8.0-0, 

0.10.0-0,  0.9.1-0,  0.9.0-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-2,  0.8.0-1,  0.8.0-0,  0.7.4-0,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5-0

depends importlib-metadata:

>=5.1.0

depends joblib:

>=1.1.0

depends lxml:

>=4.6.2

depends matplotlib-base:

>=3.1.3

depends numba:

>=0.48.0

depends numpy:

>=1.18.1

depends pandas:

>=1.0.3

depends python:

>=3.6

depends scikit-learn:

>=0.22.1

depends triqler:

>=0.6.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mokapot

and update with::

   mamba update mokapot

To create a new environment, run:

mamba create --name myenvname mokapot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mokapot:<tag>

(see `mokapot/tags`_ for valid values for ``<tag>``)

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