recipe monocle3-cli

A set of wrappers for individual components of the monocle3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently monocle3 R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

Homepage

https://github.com/ebi-gene-expression-group/monocle-scripts

License

Apache / Apache-2.0

Recipe

/monocle3-cli/meta.yaml

package monocle3-cli

Versions

0.0.9-1,  0.0.9-0,  0.0.8-0,  0.0.7-1,  0.0.7-0,  0.0.6-0,  0.0.5-1,  0.0.5-0,  0.0.4-0, 

0.0.9-1,  0.0.9-0,  0.0.8-0,  0.0.7-1,  0.0.7-0,  0.0.6-0,  0.0.5-1,  0.0.5-0,  0.0.4-0,  0.0.3-1,  0.0.3-0

Depends

• fonts-conda-ecosystem

• r-base >=3.6,<3.7.0a0

• r-monocle3 <=0.2.0

• r-optparse

Required By

• garnett-cli

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install monocle3-cli

and update with:

conda update monocle3-cli

or use the docker container:

docker pull quay.io/biocontainers/monocle3-cli:<tag>

(see monocle3-cli/tags for valid values for <tag>)

Download stats

Link to this page

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