recipe mosaik

MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome.

Homepage:

https://github.com/wanpinglee/MOSAIK

License:

GPL 2.0+

Recipe:

/mosaik/meta.yaml

Links:

biotools: mosaik, doi: 10.1371/journal.pone.0090581

package mosaik

(downloads) docker_mosaik

versions:

2.2.26-4,  2.2.26-3,  2.2.26-2,  2.2.26-1,  2.2.26-0

depends libstdcxx-ng:

>=4.9

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mosaik

and update with::

   mamba update mosaik

To create a new environment, run:

mamba create --name myenvname mosaik

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mosaik:<tag>

(see `mosaik/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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