mosdepth

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Fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing.

Home https://github.com/brentp/mosdepth
Versions 0.1.1, 0.1.3, 0.1.4a, 0.1.5, 0.1.6, 0.1.7, 0.1.9, 0.2.0
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/mosdepth

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mosdepth

and update with:

conda update mosdepth

docker

A Docker container is available at https://quay.io/repository/biocontainers/mosdepth.