recipe mosdepth

Fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing.

Homepage:

https://github.com/brentp/mosdepth

License:

MIT

Recipe:

/mosdepth/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx699, biotools: mosdepth

package mosdepth

Versions:

0.3.3-2,  0.3.3-1,  0.3.3-0,  0.3.2-1,  0.3.2-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.2.9-1, 

0.3.3-2,  0.3.3-1,  0.3.3-0,  0.3.2-1,  0.3.2-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.2.9-1,  0.2.9-0,  0.2.7-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-1,  0.2.3-0,  0.2.2-1,  0.2.1-1,  0.2.1-0,  0.2.0-0,  0.1.9-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4a-0,  0.1.3-0,  0.1.1-0

Depends:

• htslib >=1.15,<1.16.0a0

• libgcc-ng >=10.3.0

Required By:

• smoove

• hafez

• grid

• hatchet

• bioconvert

• tmb

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mosdepth

and update with:

conda update mosdepth

or use the docker container:

docker pull quay.io/biocontainers/mosdepth:<tag>

(see mosdepth/tags for valid values for <tag>)

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