recipe mosdepth

Fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing.

Homepage

https://github.com/brentp/mosdepth

License

MIT

Recipe

/mosdepth/meta.yaml

package mosdepth

(downloads) docker_mosdepth

Versions

0.2.5-0, 0.2.4-0, 0.2.3-1, 0.2.3-0, 0.2.2-1, 0.2.1-1, 0.2.1-0, 0.2.0-0, 0.1.9-0, 0.1.7-0, 0.1.6-0, 0.1.5-0, 0.1.4a-0, 0.1.3-0, 0.1.1-0

Depends htslib

>=1.9,<1.10.0a0

Depends libgcc-ng

>=7.3.0

Depends pcre

>=8.41,<9.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mosdepth

and update with:

conda update mosdepth

or use the docker container:

docker pull quay.io/biocontainers/mosdepth:<tag>

(see mosdepth/tags for valid values for <tag>)