recipe mothur

This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

Homepage:

http://www.mothur.org

Developer docs:

https://github.com/mothur/mothur

License:

GPL / GPL-3.0

Recipe:

/mothur/meta.yaml

Links:

doi: 10.1128/AEM.01541-09, usegalaxy-eu: mothur_get_label

package mothur

Versions:

1.48.0-3,  1.48.0-2,  1.48.0-1,  1.48.0-0,  1.47.0-2,  1.47.0-1,  1.47.0-0,  1.46.1-1,  1.46.1-0, 

1.48.0-3,  1.48.0-2,  1.48.0-1,  1.48.0-0,  1.47.0-2,  1.47.0-1,  1.47.0-0,  1.46.1-1,  1.46.1-0,  1.46.0-0,  1.45.3-0,  1.44.11-0,  1.44.1-2,  1.44.1-1,  1.44.1-0,  1.44.0-0,  1.43.0-0,  1.42.3-0,  1.42.1-0,  1.42.0-0,  1.41.3-0,  1.41.0-0,  1.40.5-0,  1.39.5-4,  1.39.5-3,  1.39.5-2,  1.39.5-1,  1.39.5-0,  1.38.1.1-0,  1.36.1-2,  1.36.1-1,  1.36.1-0,  1.25.0-0

Depends:

• blast-legacy

• boost-cpp >=1.78.0,<1.78.1.0a0

• gsl >=2.7,<2.8.0a0

• hdf5 >=1.12.2,<1.12.3.0a0

• libcxx >=15.0.7

• libzlib >=1.2.13,<1.3.0a0

• readline >=8.2,<9.0a0

• sra-tools

• vsearch 2.15.2.*

• zlib

Required By:

• genometreetk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mothur

and update with:

conda update mothur

or use the docker container:

docker pull quay.io/biocontainers/mothur:<tag>

(see mothur/tags for valid values for <tag>)

Download stats

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