- recipe motus
Marker gene-based OTU (mOTU) profiling
- Homepage:
- Developer docs:
- License:
GPL / GPL-3.0
- Recipe:
- package motus¶
- versions:
3.1.0-0
,3.0.3-0
,3.0.1-0
,3.0.0-0
,2.6.1-0
,2.6.0-0
,2.5.1-0
,2.5.0-0
,2.1.1-3
,3.1.0-0
,3.0.3-0
,3.0.1-0
,3.0.0-0
,2.6.1-0
,2.6.0-0
,2.5.1-0
,2.5.0-0
,2.1.1-3
,2.1.0-2
,2.1.0-1
,2.0.1-2
,2.0.1-1
,2.0.1-0
,2.0.0-0
,1.0-1
,1.0-0
- depends bwa:
>=0.7.17
- depends metasnv:
1.0.3.*
- depends python:
>=3.8
- depends samtools:
>=1.9
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install motus and update with:: mamba update motus
To create a new environment, run:
mamba create --name myenvname motus
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/motus:<tag> (see `motus/tags`_ for valid values for ``<tag>``)
Notes¶
A tiny wrapper to the command motus was added. See build.sh for
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/motus/README.html)