recipe motus

Marker gene-based OTU (mOTU) profiling

Homepage:

http://motu-tool.org/

Developer docs:

https://github.com/motu-tool/mOTUs

License:

GPL / GPL-3.0

Recipe:

/motus/meta.yaml

package motus

versions:

3.1.0-0,  3.0.3-0,  3.0.1-0,  3.0.0-0,  2.6.1-0,  2.6.0-0,  2.5.1-0,  2.5.0-0,  2.1.1-3, 

3.1.0-0,  3.0.3-0,  3.0.1-0,  3.0.0-0,  2.6.1-0,  2.6.0-0,  2.5.1-0,  2.5.0-0,  2.1.1-3,  2.1.0-2,  2.1.0-1,  2.0.1-2,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.0-1,  1.0-0

depends bwa:

>=0.7.17

depends metasnv:

1.0.3.*

depends python:

>=3.8

depends samtools:

>=1.9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install motus

and update with::

   mamba update motus

To create a new environment, run:

mamba create --name myenvname motus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/motus:<tag>

(see `motus/tags`_ for valid values for ``<tag>``)

Notes

A tiny wrapper to the command motus was added. See build.sh for

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