recipe mpa-portable

MPA Portable is a light-weight and stand-alone software for the identification of proteins and in-depth analysis of metaproteomics (and also proteomics) data.

Homepage:

https://github.com/compomics/meta-proteome-analyzer

License:

APACHE / Apache License, Version 2.0

Recipe:

/mpa-portable/meta.yaml

package mpa-portable

versions:

2.0.0-3,  2.0.0-2,  2.0.0-1,  2.0.0-0,  1.9.0-0,  1.4.1-2,  1.4.1-1,  1.4.1-0

depends comet-ms:

2016013

depends fontconfig:

depends fonts-conda-ecosystem:

depends openjdk:

depends python:

depends xtandem:

15.12.15.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mpa-portable

and update with::

   mamba update mpa-portable

To create a new environment, run:

mamba create --name myenvname mpa-portable

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mpa-portable:<tag>

(see `mpa-portable/tags`_ for valid values for ``<tag>``)

Notes

mpa-protable is Java program that comes with a custom wrapper Python script.

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