recipe mpa-server

Independent platform for interpretation of proteomics identification results

Homepage:

https://github.com/compomics/meta-proteome-analyzer

License:

APACHE / Apache License 2.0

Recipe:

/mpa-server/meta.yaml

MetaProteomeAnalyzer (MPA) is a scientific software for analyzing and visualizing metaproteomics (and also proteomics) data. The tool presents a MS/MS spectrum data processing application for protein identification in combination with a user-friendly interactive graphical interface. The metaproteomics data analysis software is developed in the Java programming language and provides various features for user-defined querying of the results.

package mpa-server

(downloads) docker_mpa-server

versions:

3.4-3,  3.4-2,  3.4-1,  3.4-0,  3.3-1,  3.3-0

depends mysql:

5.*

depends openjdk:

8.*

depends perl:

depends python:

depends requests:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mpa-server

and update with::

   mamba update mpa-server

To create a new environment, run:

mamba create --name myenvname mpa-server

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mpa-server:<tag>

(see `mpa-server/tags`_ for valid values for ``<tag>``)

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Link to this page

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