recipe mquad

MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data.

Homepage:

https://github.com/aaronkwc/MQuad

Documentation:

https://github.com/single-cell-genetics/MQuad/blob/main/README.rst

License:

APACHE / Apache-2.0

Recipe:

/mquad/meta.yaml

Links:

doi: 10.1038/s41467-022-28845-0, biotools: mquad

package mquad

(downloads) docker_mquad

versions:

0.1.8b-0

depends bbmix:

>=0.2.2

depends kneed:

depends matplotlib-base:

depends numpy:

>=1.9.0

depends pandas:

depends python:

>=3.8

depends scikit-learn:

depends scipy:

>=1.4.0

depends seaborn-base:

depends vireosnp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mquad

and update with::

   mamba update mquad

To create a new environment, run:

mamba create --name myenvname mquad

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mquad:<tag>

(see `mquad/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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