recipe msmc2

This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data

Homepage:

https://github.com/stschiff/msmc2

License:

GPL 3

Recipe:

/msmc2/meta.yaml

package msmc2

(downloads) docker_msmc2

versions:

2.1.4-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install msmc2

and update with::

   mamba update msmc2

To create a new environment, run:

mamba create --name myenvname msmc2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/msmc2:<tag>

(see `msmc2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/msmc2/README.html)