recipe mtsv

MTSv is a suite of metagenomic binning and analysis tools.

Homepage:

https://github.com/FofanovLab/MTSv

License:

MIT / MIT

Recipe:

/mtsv/meta.yaml

package mtsv

versions:

1.0.6-2,  1.0.6-1,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0

depends biopython:

depends bwa:

depends click:

depends concoct:

depends ete3:

depends gsl:

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends megahit:

depends mtsv-tools:

depends numpy:

depends pandas:

>=0.20.3

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends pyyaml:

depends samtools:

depends scipy:

depends six:

depends snakemake:

>=4.1.0

depends wgfast:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mtsv

and update with::

   mamba update mtsv

To create a new environment, run:

mamba create --name myenvname mtsv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mtsv:<tag>

(see `mtsv/tags`_ for valid values for ``<tag>``)

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