recipe multiqc-bcbio

MultiQC plugin for bcbio report visualization.

Homepage:

http://multiqc.info

License:

GPL3

Recipe:

/multiqc-bcbio/meta.yaml

package multiqc-bcbio

versions:

0.2.9-0,  0.2.8-1,  0.2.8-0,  0.2.6-4,  0.2.6-3,  0.2.6-2,  0.2.6-0,  0.2.5-1,  0.2.5-0, 

0.2.9-0,  0.2.8-1,  0.2.8-0,  0.2.6-4,  0.2.6-3,  0.2.6-2,  0.2.6-0,  0.2.5-1,  0.2.5-0,  0.2.4-1,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.2.0dev-4,  0.2.0dev-3,  0.2.0dev-2,  0.2.0dev-1,  0.2.0dev-0,  0.1.9-1,  0.1.9-0,  0.1.8-0,  0.1.7-1,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-1,  0.1.3-1,  0.1.2-2,  0.1.2-1,  0.1.1-1,  0.1.0-1,  0.1.0-0

depends multiqc:

>=1.2

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install multiqc-bcbio

and update with::

   mamba update multiqc-bcbio

To create a new environment, run:

mamba create --name myenvname multiqc-bcbio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/multiqc-bcbio:<tag>

(see `multiqc-bcbio/tags`_ for valid values for ``<tag>``)

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