recipe mummer

MUMmer is a system for rapidly aligning entire genomes

Homepage:

http://mummer.sourceforge.net/

License:

The Artistic License

Recipe:

/mummer/meta.yaml

Links:

biotools: mummer

package mummer

Versions:

3.23-14,  3.23-13,  3.23-12,  3.23-11,  3.23-10,  3.23-9,  3.23-8,  3.23-7,  3.23-6, 

3.23-14,  3.23-13,  3.23-12,  3.23-11,  3.23-10,  3.23-9,  3.23-8,  3.23-7,  3.23-6,  3.23-5,  3.23-4,  3.23-3,  3.23-2,  3.23-1,  3.23-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• perl >=5.32.1,<5.33.0a0 *_perl5

Required By:

• ultra_bioinformatics

• ariba

• iva

• scaffold_builder

• intemap

• phame

• seqscreen

• haphpipe

• pymummer

• hla-la

• snvphyl-tools

• quickmerge

• ragtag

• amos

• agrvate

• siann

• abacas

• mtglink

• strainest

• nasp

• nucdiff

• ratt

• pyani

• spine

• circlator

• svanalyzer

• gmcloser

• sis

• assemblytics

• hapsolo

• hla-asm

• hybran

• seroba

• mummer2circos

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mummer

and update with:

conda update mummer

or use the docker container:

docker pull quay.io/biocontainers/mummer:<tag>

(see mummer/tags for valid values for <tag>)

Download stats

Link to this page

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