recipe mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

Homepage:

https://github.com/metagenlab/mummer2circos

License:

MIT

Recipe:

/mummer2circos/meta.yaml

package mummer2circos

Versions:

1.4.2-0

Depends:

• biopython 1.72.*

• blast

• circos 0.69.8 0

• libiconv

• libwebp 0.5.*

• matplotlib-base

• mummer

• pandas

• perl-math-bezier 0.01 pl526_1

• perl-math-round 0.07 pl526_1

• perl-math-vecstat 0.08 pl526_1

• perl-set-intspan 1.19 pl526_1

• perl-statistics-basic 1.6611 pl526_2

• python

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mummer2circos

and update with:

conda update mummer2circos

or use the docker container:

docker pull quay.io/biocontainers/mummer2circos:<tag>

(see mummer2circos/tags for valid values for <tag>)

Download stats

Link to this page

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