recipe mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

Homepage:

https://github.com/metagenlab/mummer2circos

License:

MIT

Recipe:

/mummer2circos/meta.yaml

package mummer2circos

versions:

1.4.2-0

depends biopython:

1.72.*

depends blast:

depends circos:

0.69.8 0

depends libiconv:

depends libwebp:

0.5.*

depends matplotlib-base:

depends mummer:

depends pandas:

depends perl-math-bezier:

0.01 pl526_1

depends perl-math-round:

0.07 pl526_1

depends perl-math-vecstat:

0.08 pl526_1

depends perl-set-intspan:

1.19 pl526_1

depends perl-statistics-basic:

1.6611 pl526_2

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mummer2circos

and update with::

   mamba update mummer2circos

To create a new environment, run:

mamba create --name myenvname mummer2circos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mummer2circos:<tag>

(see `mummer2circos/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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