recipe mummer4

MUMmer is a system for rapidly aligning entire genomes.

Homepage:

https://mummer4.github.io

Documentation:

https://github.com/mummer4/mummer/blob/v4.0.1/README.md

Developer docs:

https://github.com/mummer4/mummer

License:

Artistic License 2.0

Recipe:

/mummer4/meta.yaml

Links:

doi: 10.1371/journal.pcbi.1005944, biotools: mummer4, usegalaxy-eu: mummer_mummer, usegalaxy-eu: mummerplot, usegalaxy-eu: mummerplot_wrapper

package mummer4

(downloads) docker_mummer4

versions:
4.0.1-0,  4.0.0-0,  4.0.0rc1-8,  4.0.0rc1-7,  4.0.0rc1-6,  4.0.0rc1-5,  4.0.0rc1-4,  4.0.0rc1-3,  4.0.0rc1-2, 

4.0.1-0,  4.0.0-0,  4.0.0rc1-8,  4.0.0rc1-7,  4.0.0rc1-6,  4.0.0rc1-5,  4.0.0rc1-4,  4.0.0rc1-3,  4.0.0rc1-2,  4.0.0rc1-1,  4.0.0rc1-0,  4.0.0beta2-5,  4.0.0beta2-4,  4.0.0beta2-3,  4.0.0beta2-2,  4.0.0beta2-1,  4.0.0beta2-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends yaggo:

>=1.5.10,<1.6.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mummer4

and update with::

   mamba update mummer4

To create a new environment, run:

mamba create --name myenvname mummer4

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mummer4:<tag>

(see `mummer4/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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