recipe muse

An accurate and ultra-fast somatic point mutation calling tool for whole-genome sequencing (WGS) and whole-exome sequencing (WES) data from heterogeneous tumor samples.

Homepage:

https://bioinformatics.mdanderson.org/public-software/muse

Documentation:

https://github.com/wwylab/MuSE/blob/v2.1.2/README.md

Developer docs:

https://github.com/wwylab/MuSE

License:

GPL / GPL-2.0-or-later

Recipe:

/muse/meta.yaml

Links:

doi: 10.1101/gr.278456.123, doi: 10.1186/s13059-016-1029-6

package muse

(downloads) docker_muse

versions:
2.1.2-3,  2.1.2-2,  2.1.2-1,  2.1.2-0,  1.0.rc-8,  1.0.rc-7,  1.0.rc-6,  1.0.rc-5,  1.0.rc-4, 

2.1.2-3,  2.1.2-2,  2.1.2-1,  2.1.2-0,  1.0.rc-8,  1.0.rc-7,  1.0.rc-6,  1.0.rc-5,  1.0.rc-4,  1.0.rc-3,  1.0.rc-2,  1.0.rc-1,  1.0.rc-0

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends icu:

>=73.2,<74.0a0

depends libcurl:

>=8.10.1,<9.0a0

depends libgcc:

>=13

depends libgomp:

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install muse

and update with::

   mamba update muse

To create a new environment, run:

mamba create --name myenvname muse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/muse:<tag>

(see `muse/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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