recipe muset

A pipeline for building an abundance unitig matrix from FASTA/FASTQ files

Homepage:

https://github.com/CamilaDuitama/muset

License:

GPL-3.0-or-later

Recipe:

/muset/meta.yaml

MUSET is a software for generating an abundance unitig matrix from a collection of input samples (in FASTA/Q format).

package muset

(downloads) docker_muset

versions:

0.5.1-0

depends ggcat:

>=1.1.0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install muset

and update with::

   mamba update muset

To create a new environment, run:

mamba create --name myenvname muset

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/muset:<tag>

(see `muset/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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