recipe mview

MView extracts and reformats the results of a sequence database search or multiple alignment.

Homepage:

https://desmid.github.io/mview

Documentation:

https://desmid.github.io/mview/contents.html

Developer docs:

https://github.com/desmid/mview

License:

GPL2 / GPL-2.0-or-later

Recipe:

/mview/meta.yaml

MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats.

Inputs:

- Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF.

Outputs:

- HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated).

The tool is used in molecular biology and biomedical research for data analyses and as a component in various bioinformatics web services. Research papers citing MView are indexed on [Google Scholar](https://scholar.google.com/citations?user=4ughzM0AAAAJ&hl=en).

package mview

(downloads) docker_mview

versions:

1.68-0

depends perl:

>=5.0,<6.0

depends perl:

>=5.32.1,<6.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mview

and update with::

   mamba update mview

To create a new environment, run:

mamba create --name myenvname mview

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mview:<tag>

(see `mview/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mview/README.html)