recipe mycotools

Comparative genomics automation and standardization software.

Homepage:

https://github.com/xonq/mycotools

Documentation:

https://github.com/xonq/mycotools/wiki

License:

BSD / BSD-3-Clause

Recipe:

/mycotools/meta.yaml

package mycotools

versions:

0.32.5-0,  0.32.4-0,  0.32.3-0,  0.32.2-0,  0.32.1-1,  0.32.1-0,  0.31.48-0,  0.31.46-0,  0.31.45-0, 

0.32.5-0,  0.32.4-0,  0.32.3-0,  0.32.2-0,  0.32.1-1,  0.32.1-0,  0.31.48-0,  0.31.46-0,  0.31.45-0,  0.31.44-0,  0.31.43-0,  0.31.42-0,  0.31.41-0,  0.31.40-0,  0.31.39-0,  0.31.38-0,  0.31.37-0,  0.31.36-0,  0.31.35-0,  0.31.34-0

depends biopython:

depends blast:

depends cryptography:

depends diamond:

depends ete3:

depends fasttree:

depends hmmer:

depends iqtree:

depends mafft:

depends mmseqs2:

depends ncbi-datasets-cli:

depends openpyxl:

depends pandas:

depends python:

>=3

depends requests:

depends scipy:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mycotools

and update with::

   mamba update mycotools

To create a new environment, run:

mamba create --name myenvname mycotools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mycotools:<tag>

(see `mycotools/tags`_ for valid values for ``<tag>``)

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