recipe mykatlas

Assists in discoveries of antibiotic-resistance with mykrobe

Homepage:

http://github.com/phelimb/atlas

License:

MIT / MIT

Recipe:

/mykatlas/meta.yaml

package mykatlas

versions:

0.6.1-8,  0.6.1-7,  0.6.1-6,  0.6.1-5,  0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-1,  0.6.1-0

depends biopython:

depends future:

depends ga4ghmongo:

depends mongoengine:

depends python:

>=3.9,<3.10.0a0

depends python_abi:

3.9.* *_cp39

depends pyvcf:

depends redis-py:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mykatlas

and update with::

   mamba update mykatlas

To create a new environment, run:

mamba create --name myenvname mykatlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mykatlas:<tag>

(see `mykatlas/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mykatlas/README.html)