recipe naibr-plus

Identify novel adjacencies created by structural variations using linked-read data

Homepage:

https://github.com/pontushojer/NAIBR

License:

MIT

Recipe:

/naibr-plus/meta.yaml

package naibr-plus

versions:

0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5-0

depends matplotlib-base:

depends mpmath:

depends numpy:

depends pysam:

>=0.15.0

depends python:

>=3.7

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install naibr-plus

and update with::

   mamba update naibr-plus

To create a new environment, run:

mamba create --name myenvname naibr-plus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/naibr-plus:<tag>

(see `naibr-plus/tags`_ for valid values for ``<tag>``)

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