recipe namfinder

Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers

Homepage:

https://github.com/ksahlin/namfinder

License:

MIT License

Recipe:

/namfinder/meta.yaml

package namfinder

(downloads) docker_namfinder

versions:

0.1.3-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install namfinder

and update with::

   mamba update namfinder

To create a new environment, run:

mamba create --name myenvname namfinder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/namfinder:<tag>

(see `namfinder/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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