recipe nanocompore

Nanocompore identifies raw signal changes between two conditions dRNA-Seq data.



GPL3 / GNU General Public v3 (GPLv3)




usegalaxy-eu: nanocompore_db

package nanocompore

(downloads) docker_nanocompore



depends bedparse:

depends importlib_metadata:

depends loguru:

depends matplotlib-base:

depends numpy:


depends pandas:

depends pyfaidx:

depends python:


depends pyyaml:

depends scikit-learn:


depends scipy:


depends seaborn:

depends statsmodels:


depends tqdm:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanocompore

and update with::

   mamba update nanocompore

To create a new environment, run:

mamba create --name myenvname nanocompore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `nanocompore/tags`_ for valid values for ``<tag>``)

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