recipe nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments.

Homepage:

https://github.com/wdecoster/nanoget

License:

GPL / GPL-3.0-only

Recipe:

/nanoget/meta.yaml

package nanoget

(downloads) docker_nanoget

versions:
1.19.3-0,  1.19.1-0,  1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.1-0,  1.16.0-0,  1.15.0-0,  1.14.0-0, 

1.19.3-0,  1.19.1-0,  1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.1-0,  1.16.0-0,  1.15.0-0,  1.14.0-0,  1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.1-0,  1.9.0-0,  1.8.0-1,  1.8.0-0,  1.7.6-0,  1.7.4-0,  1.5.2-0,  1.5.0-1,  1.5.0-0,  1.2.2-0,  1.0.2-0,  1.0.0-0,  0.11.7-0,  0.11.5-0

depends biopython:

depends numpy:

depends pandas:

>=2.0.0

depends pysam:

>0.10.0

depends python:

>=3.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanoget

and update with::

   mamba update nanoget

To create a new environment, run:

mamba create --name myenvname nanoget

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanoget:<tag>

(see `nanoget/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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