recipe nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments.

Homepage:

https://github.com/wdecoster/nanoget

License:

GPL / GPL-3.0-only

Recipe:

/nanoget/meta.yaml

package nanoget

Versions:

1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.1-0,  1.16.0-0,  1.15.0-0,  1.14.0-0,  1.13.2-0,  1.13.1-0, 

1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.1-0,  1.16.0-0,  1.15.0-0,  1.14.0-0,  1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.1-0,  1.9.0-0,  1.8.0-1,  1.8.0-0,  1.7.6-0,  1.7.4-0,  1.5.2-0,  1.5.0-1,  1.5.0-0,  1.2.2-0,  1.0.2-0,  1.0.0-0,  0.11.7-0,  0.11.5-0

Depends:

• biopython

• nanomath

• numpy

• pandas >=0.22.0

• pysam >0.10.0

• python >=3

Required By:

• nanosplit

• nanoplot

• nanofilt

• nanostat

• fastqmetrics

• nanocomp

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nanoget

and update with:

conda update nanoget

or use the docker container:

docker pull quay.io/biocontainers/nanoget:<tag>

(see nanoget/tags for valid values for <tag>)

Download stats

Link to this page

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