recipe nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments.

Homepage

https://github.com/wdecoster/nanoget

License

MIT / MIT License

Recipe

/nanoget/meta.yaml

package nanoget

Versions

1.7.6-0, 1.7.4-0, 1.5.2-0, 1.5.0-1, 1.5.0-0, 1.2.2-0, 1.0.2-0, 1.0.0-0, 0.11.7-0, 0.11.5-0

Depends

• biopython

• nanomath

• numpy

• pandas >=0.22.0

• pysam >0.10.0.0

• python >=3.5,<3.6.0a0

Required By

• nanofilt

• nanostat

• nanocomp

• nanosplit

• nanoplot

• fastqmetrics

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nanoget

and update with:

conda update nanoget

or use the docker container:

docker pull quay.io/biocontainers/nanoget:<tag>

(see nanoget/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanoget/README.html)