recipe nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments.

Homepage

https://github.com/wdecoster/nanoget

License

MIT / MIT License

Recipe

/nanoget/meta.yaml

package nanoget

Versions

1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.1-0, 

1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.1-0,  1.9.0-0,  1.8.0-1,  1.8.0-0,  1.7.6-0,  1.7.4-0,  1.5.2-0,  1.5.0-1,  1.5.0-0,  1.2.2-0,  1.0.2-0,  1.0.0-0,  0.11.7-0,  0.11.5-0

Depends

• biopython

• nanomath

• numpy

• pandas >=0.22.0

• pysam >0.10.0

• python >=3

Required By

• nanofilt

• nanosplit

• nanocomp

• nanoplot

• nanostat

• fastqmetrics

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nanoget

and update with:

conda update nanoget

or use the docker container:

docker pull quay.io/biocontainers/nanoget:<tag>

(see nanoget/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanoget/README.html)