recipe nanoinsight

Repeat annotation tool for insertions called by NanoVar

Homepage:

https://github.com/AsmaaSamyMohamedMahmoud/nanoinsight

License:

GPL-3.0-or-later

Recipe:

/nanoinsight/meta.yaml

package nanoinsight

versions:

0.0.3-0

depends biopython:

>=1.82

depends mafft:

depends pandas:

>=1.5.3

depends python:

>=3.8

depends repeatmasker:

depends scikit-allel:

>=1.3.7

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanoinsight

and update with::

   mamba update nanoinsight

To create a new environment, run:

mamba create --name myenvname nanoinsight

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanoinsight:<tag>

(see `nanoinsight/tags`_ for valid values for ``<tag>``)

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