- recipe nanometa-live
Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads.
- Homepage:
- Documentation:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- package nanometa-live¶
- versions:
0.4.3-0,0.4.2-0,0.4.1-0,0.4.0-0,0.3.1-0,0.3.0-0,0.1.1-0- depends biopython:
>=1.80- depends blast:
>=2.13.0- depends dash:
>=2.8.1- depends dash-bootstrap-components:
>=1.3.1- depends dash-daq:
>=0.5.0- depends fastp:
>=0.23.2- depends gzip:
>=1.10- depends kraken2:
>=2.1.2- depends ncbi-datasets-cli:
>=15.20.0- depends numpy:
>=1.24.1- depends pandas:
>=1.5.3- depends plotly:
>=5.13.0- depends pytest:
>=7.2.1- depends python:
>=3.9- depends pyyaml:
>=6.0- depends ruamel.yaml:
>=0.17.32- depends snakemake-minimal:
>=7.20.0- depends tqdm:
>=4.62.3- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install nanometa-live and update with:: mamba update nanometa-live
To create a new environment, run:
mamba create --name myenvname nanometa-live
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/nanometa-live:<tag> (see `nanometa-live/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/nanometa-live/README.html)
