recipe nanomonsv

Python tools for detecting structural variation from nanopore sequence data

Homepage:

https://github.com/friend1ws/nanomonsv

License:

GPL-3.0

Recipe:

/nanomonsv/meta.yaml

package nanomonsv

Versions:

0.5.1-0,  0.5.0-0

Depends:

• bedtools 2.30.0.*

• bwa 0.7.17.*

• htslib 1.15.*

• mafft 7.407.*

• minimap2 2.24.*

• numpy 1.23.0.*

• parasail-python 1.2.4.*

• pysam 0.19.1.*

• python >=3.6

• racon 1.4.3.*

• repeatmasker 4.1.1.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nanomonsv

and update with:

conda update nanomonsv

or use the docker container:

docker pull quay.io/biocontainers/nanomonsv:<tag>

(see nanomonsv/tags for valid values for <tag>)

Download stats

Link to this page

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