recipe nanomotif

Identifying methlyation motifs in nanopore data

Homepage:

https://github.com/MicrobialDarkMatter/nanomotif

Documentation:

https://nanomotif.readthedocs.io/en/latest

License:

MIT / MIT

Recipe:

/nanomotif/meta.yaml

package nanomotif

(downloads) docker_nanomotif

versions:
0.4.15-0,  0.4.14-0,  0.4.13-0,  0.4.12-0,  0.4.11-0,  0.4.10-0,  0.4.9-0,  0.4.8-0,  0.4.7-0, 

0.4.15-0,  0.4.14-0,  0.4.13-0,  0.4.12-0,  0.4.11-0,  0.4.10-0,  0.4.9-0,  0.4.8-0,  0.4.7-0,  0.4.6-0,  0.4.5-0,  0.4.4-0,  0.4.3-0,  0.1.20-0,  0.1.19-0,  0.1.18-0,  0.1.17-0,  0.1.15-0,  0.1.14-0,  0.1.13-0,  0.1.7-0

depends bio:

>=1.6.2

depends biopython:

>=1.6.2

depends networkx:

>=3.1

depends numpy:

>=1.24.4

depends pandas:

>=2.0.2

depends polars:

>=0.19

depends progressbar2:

>=3.53.1

depends pyarrow:

>=15.0.2

depends python:

depends requests:

depends scipy:

>=1.10.1

depends seaborn-base:

>=0.12.2

depends snakemake-minimal:

>=7.32.4

depends wheel:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanomotif

and update with::

   mamba update nanomotif

To create a new environment, run:

mamba create --name myenvname nanomotif

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanomotif:<tag>

(see `nanomotif/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanomotif/README.html)