recipe nanopolish

Signal-level algorithms for MinION data.

Homepage:

https://github.com/jts/nanopolish

License:

MIT

Recipe:

/nanopolish/meta.yaml

Links:

usegalaxy-eu: nanopolish_eventalign

package nanopolish

versions:

0.14.0-5,  0.14.0-4,  0.14.0-3,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.2-10,  0.13.2-9,  0.13.2-8, 

0.14.0-5,  0.14.0-4,  0.14.0-3,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.2-10,  0.13.2-9,  0.13.2-8,  0.13.2-7,  0.13.2-6,  0.13.2-5,  0.13.2-4,  0.13.2-2,  0.13.2-1,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.5-2,  0.12.5-1,  0.12.5-0,  0.12.4-0,  0.12.3-0,  0.12.2-0,  0.12.0-0,  0.11.3-0,  0.11.2-0,  0.11.1-0,  0.11.0-1,  0.11.0-0,  0.10.2-0,  0.10.1-0,  0.9.2-5,  0.9.2-4,  0.9.2-0,  0.9.0-2,  0.9.0-1,  0.9.0-0,  0.8.5-4,  0.8.5-3,  0.8.1-3,  0.7.1-3,  0.7.1-1,  0.7.1-0,  0.7.0-0,  0.6.0-0,  0.6.0.dev-0,  0.4.0-0

depends _openmp_mutex:

>=4.5

depends biopython:

depends hdf5:

>=1.14.3,<1.14.4.0a0

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends ont_vbz_hdf_plugin:

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanopolish

and update with::

   mamba update nanopolish

To create a new environment, run:

mamba create --name myenvname nanopolish

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanopolish:<tag>

(see `nanopolish/tags`_ for valid values for ``<tag>``)

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