recipe nanopore_simulation

Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

Homepage:

https://github.com/crohrandt/nanopore_simulation

License:

MPL-2.0

Recipe:

/nanopore_simulation/meta.yaml

package nanopore_simulation

versions:

0.3-2,  0.3-1,  0.3-0

depends biopython:

depends h5py:

depends matplotlib:

depends numpy:

depends pandas:

depends python:

>=3

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanopore_simulation

and update with::

   mamba update nanopore_simulation

To create a new environment, run:

mamba create --name myenvname nanopore_simulation

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanopore_simulation:<tag>

(see `nanopore_simulation/tags`_ for valid values for ``<tag>``)

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