recipe nanosim-h

NanoSim-H is a simulator of Oxford Nanopore reads that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of Nanopore sequencing technology.

Homepage:

https://github.com/karel-brinda/NanoSim-H

License:

GPLv3

Recipe:

/nanosim-h/meta.yaml

package nanosim-h

versions:

1.1.0.4-2,  1.1.0.4-1,  1.1.0.4-0,  1.1.0.3-3,  1.1.0.3-0,  1.1.0.2-1

depends last:

depends numpy:

depends progressbar2:

depends python:

depends r-base:

>=4.0,<4.1.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanosim-h

and update with::

   mamba update nanosim-h

To create a new environment, run:

mamba create --name myenvname nanosim-h

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanosim-h:<tag>

(see `nanosim-h/tags`_ for valid values for ``<tag>``)

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Link to this page

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