recipe nanosv

Structural variation detection tool for Oxford Nanopore data.

Homepage:

https://github.com/mroosmalen/nanosv

License:

MIT / MIT License

Recipe:

/nanosv/meta.yaml

Links:

doi: 10.1038/s41467-017-01343-4

package nanosv

(downloads) docker_nanosv

versions:

1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.0-1,  1.1.2-1,  1.1.2-0,  0.0.1-0

depends pysam:

depends python:

>3

depends pyvcf:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanosv

and update with::

   mamba update nanosv

To create a new environment, run:

mamba create --name myenvname nanosv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanosv:<tag>

(see `nanosv/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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