recipe nanovar

Structural variant caller using low-depth long reads

Homepage:

https://github.com/cytham/nanovar

License:

GPL3 / GPL-3.0-or-later

Recipe:

/nanovar/meta.yaml

package nanovar

Versions:

1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.9-1,  1.3.9-0,  1.3.8-1,  1.3.8-0,  1.3.6-0,  1.3.5-0, 

1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.9-1,  1.3.9-0,  1.3.8-1,  1.3.8-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.3-0

Depends:

• bedtools >=2.26.0

• biopython >=1.74

• blast >=2.5.0

• cytocad >=1.0.3

• hs-blastn >=0.0.5

• libgcc-ng >=10.3.0

• matplotlib-base >=2.2.3

• minimap2 >=2.17

• natsort >=6.2.0

• numpy >=1.17.3

• progress >=1.4

• pybedtools >=0.8.2

• pysam >=0.15.3

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools >=1.3

• scipy >=1.2.1

• tensorflow-mkl >=2.0.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nanovar

and update with:

conda update nanovar

or use the docker container:

docker pull quay.io/biocontainers/nanovar:<tag>

(see nanovar/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanovar/README.html)