recipe nasp

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Homepage:

https://github.com/TGenNorth/nasp

License:

Academic and Research License

Recipe:

/nasp/meta.yaml

Links:

doi: 10.1099/mgen.0.000074

package nasp

(downloads) docker_nasp

versions:
1.2.1-11.2.1-01.2.0-01.1.2-11.1.2-01.0.2a1-31.0.2a1-21.0.2a1-11.0.1-1

1.2.1-11.2.1-01.2.0-01.1.2-11.1.2-01.0.2a1-31.0.2a1-21.0.2a1-11.0.1-11.0.1-0

depends mummer:

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends samtools:

<1.3

depends trimmomatic:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nasp

and update with::

   mamba update nasp

To create a new environment, run:

mamba create --name myenvname nasp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nasp:<tag>

(see `nasp/tags`_ for valid values for ``<tag>``)

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