recipe nasp

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Homepage:

https://github.com/TGenNorth/nasp

License:

Academic and Research License

Recipe:

/nasp/meta.yaml

Links:

doi: 10.1099/mgen.0.000074

package nasp

Versions:

1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.2-1,  1.1.2-0,  1.0.2a1-3,  1.0.2a1-2,  1.0.2a1-1,  1.0.1-1, 

1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.2-1,  1.1.2-0,  1.0.2a1-3,  1.0.2a1-2,  1.0.2a1-1,  1.0.1-1,  1.0.1-0

Depends:

• mummer

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools <1.3

• trimmomatic

Required By:

• wgfast

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nasp

and update with:

conda update nasp

or use the docker container:

docker pull quay.io/biocontainers/nasp:<tag>

(see nasp/tags for valid values for <tag>)

Download stats

Link to this page

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