recipe nasp

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Homepage

https://github.com/TGenNorth/nasp

License

Academic and Research License

Recipe

/nasp/meta.yaml

Links

doi: 10.1099/mgen.0.000074

package nasp

Versions

1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.2-1,  1.1.2-0,  1.0.2a1-3,  1.0.2a1-2,  1.0.2a1-1,  1.0.1-1, 

1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.2-1,  1.1.2-0,  1.0.2a1-3,  1.0.2a1-2,  1.0.2a1-1,  1.0.1-1,  1.0.1-0

Depends

• mummer

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools <1.3

• trimmomatic

Required By

• wgfast

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nasp

and update with:

conda update nasp

or use the docker container:

docker pull quay.io/biocontainers/nasp:<tag>

(see nasp/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nasp/README.html)