recipe ncbi-vdb

SRA tools database engine

Homepage

https://github.com/ncbi/ncbi-vdb

License

Public Domain

Recipe

/ncbi-vdb/meta.yaml

VDB is the database engine that all SRA tools use. It is a columnar database system with a number of unique features. All SRA objects are stored in VDB.

package ncbi-vdb

Versions

2.10.9-0,  2.10.8-0,  2.10.7-0,  2.10.6-0,  2.10.5-0,  2.10.4-0,  2.10.3-0,  2.10.2-0,  2.10.1-0, 

2.10.9-0,  2.10.8-0,  2.10.7-0,  2.10.6-0,  2.10.5-0,  2.10.4-0,  2.10.3-0,  2.10.2-0,  2.10.1-0,  2.10.0-0,  2.9.6-0,  2.9.3-0,  2.9.1-0,  2.9.0-0

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

Required By

• igblast

• ncbi-vdb-py

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ncbi-vdb

and update with:

conda update ncbi-vdb

or use the docker container:

docker pull quay.io/biocontainers/ncbi-vdb:<tag>

(see ncbi-vdb/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ncbi-vdb/README.html)