recipe ncbi-vdb

SRA tools database engine

Homepage:

https://github.com/ncbi/ncbi-vdb

License:

Public Domain

Recipe:

/ncbi-vdb/meta.yaml

VDB is the database engine that all SRA tools use. It is a columnar database system with a number of unique features. All SRA objects are stored in VDB.

package ncbi-vdb

Versions:

3.0.5-2,  3.0.5-0,  3.0.2-2,  3.0.2-1,  3.0.2-0,  3.0.0-0,  2.11.0-1,  2.11.0-0,  2.10.9-0, 

3.0.5-2,  3.0.5-0,  3.0.2-2,  3.0.2-1,  3.0.2-0,  3.0.0-0,  2.11.0-1,  2.11.0-0,  2.10.9-0,  2.10.8-0,  2.10.7-0,  2.10.6-0,  2.10.5-0,  2.10.4-0,  2.10.3-0,  2.10.2-0,  2.10.1-0,  2.10.0-0,  2.9.6-0,  2.9.3-0,  2.9.1-0,  2.9.0-0

Depends:

• ca-certificates

• curl

• libgcc-ng >=12

• libstdcxx-ng >=12

• ossuuid

• perl

• perl-uri

• perl-xml-libxml

Required By:

• sra-tools

• ncbi-vdb-py

• igblast

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ncbi-vdb

and update with:

conda update ncbi-vdb

or use the docker container:

docker pull quay.io/biocontainers/ncbi-vdb:<tag>

(see ncbi-vdb/tags for valid values for <tag>)

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