recipe ncfp

A program/module to find nt sequences that code for aa sequences

Homepage:

http://widdowquinn.github.io/ncfp/

Documentation:

https://ncfp.readthedocs.io/en/latest/

Developer docs:

https://github.com/widdowquinn/ncfp

License:

MIT / MIT

Recipe:

/ncfp/meta.yaml

ncfp is a script and module that facilitates recovery of nucleotide sequences from NCBI that encode a set of input protein sequences

package ncfp

(downloads) docker_ncfp

versions:

0.2.0-00.1.1-00.1.0-10.1.0-0

depends biopython:

depends bioservices:

depends python:

>=3

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ncfp

and update with::

   mamba update ncfp

To create a new environment, run:

mamba create --name myenvname ncfp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ncfp:<tag>

(see `ncfp/tags`_ for valid values for ``<tag>``)

Download stats