recipe neat

Toolset for generating synthethic FASTQ, VCF and BAM files.

Homepage:

https://github.com/ncsa/NEAT/

License:

BSD / BSD-3-Clause

Recipe:

/neat/meta.yaml

package neat

versions:

4.2.7-0,  4.2.6-0,  4.2.5-0,  4.2.4-0,  4.2.3-0,  4.2.2-0,  4.2.1-0,  4.1.2-0,  4.1.1-0, 

4.2.7-0,  4.2.6-0,  4.2.5-0,  4.2.4-0,  4.2.3-0,  4.2.2-0,  4.2.1-0,  4.1.2-0,  4.1.1-0,  4.0-0

depends bedtools:

depends biopython:

1.79.*

depends frozendict:

depends htslib:

depends matplotlib-base:

depends numpy:

depends pkginfo:

depends pybedtools:

>=0.9.0

depends pysam:

depends python:

>=3.10

depends pyyaml:

depends scipy:

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install neat

and update with::

   mamba update neat

To create a new environment, run:

mamba create --name myenvname neat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/neat:<tag>

(see `neat/tags`_ for valid values for ``<tag>``)

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