recipe needle

Needle: A fast and space-efficient pre-filter for the quantification of very large collections of nucleotide sequences

Homepage:

https://github.com/seqan/needle

License:

BSD / BSD-3-Clause License

Recipe:

/needle/meta.yaml

Needle is a tool for approximately quantifiying many queries in large collections of nucleotide sequences.

package needle

versions:

1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.1-0,  1.0.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install needle

and update with::

   mamba update needle

To create a new environment, run:

mamba create --name myenvname needle

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/needle:<tag>

(see `needle/tags`_ for valid values for ``<tag>``)

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