Package Recipe 'nextpolish'

recipe nextpolish

Fast and accurately polish the genome generated by long reads

Homepage:: https://github.com/Nextomics/NextPolish
Documentation:: https://nextpolish.readthedocs.io/en/latest/index.html
License:: GPL / GPL-3
Recipe:: /nextpolish/meta.yaml

package nextpolish¶

Versions:

1.4.1-1, 1.4.1-0

Depends:

bwa
bzip2
libgcc-ng >=12
libzlib >=1.2.13,<1.3.0a0
minimap2
paralleltask
python >=3.11,<3.12.0a0
samtools

Required By:

etoki

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nextpolish

and update with:

conda update nextpolish

or use the docker container:

docker pull quay.io/biocontainers/nextpolish:<tag>

(see nextpolish/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nextpolish/README.html)