recipe nextstrain

Nextstrain toolchain (meta-package)

Homepage

https://nextstrain.org

Documentation

https://docs.nextstrain.org/

Developer docs

https://github.com/nextstrain/

License

The license for this meta-package is MIT; individual tools vary.

Recipe

/nextstrain/meta.yaml

Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. It includes a collection of open-source tools to aid in our understanding of pathogen spread and evolution, especially in outbreak scenarios. These tools are designed to be used with a wide range of data sources and designed to be modular so they can be replaced with your own tooling when necessary.

package nextstrain

(downloads) docker_nextstrain

Versions

20200304-120200304-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nextstrain

and update with:

conda update nextstrain

or use the docker container:

docker pull quay.io/biocontainers/nextstrain:<tag>

(see nextstrain/tags for valid values for <tag>)