recipe nextstrain

Nextstrain toolchain (meta-package)

Homepage:

https://nextstrain.org

Documentation:

https://docs.nextstrain.org/

Developer docs:

https://github.com/nextstrain/

License:

The license for this meta-package is MIT; individual tools vary.

Recipe:

/nextstrain/meta.yaml

Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. It includes a collection of open-source tools to aid in our understanding of pathogen spread and evolution, especially in outbreak scenarios. These tools are designed to be used with a wide range of data sources and designed to be modular so they can be replaced with your own tooling when necessary.

package nextstrain

Versions:

20200304-1,  20200304-0

Depends:

• augur

• auspice

• awscli

• git

• nextalign

• nextstrain-cli

• pip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nextstrain

and update with:

conda update nextstrain

or use the docker container:

docker pull quay.io/biocontainers/nextstrain:<tag>

(see nextstrain/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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