- recipe nextstrain
Nextstrain toolchain (meta-package)
- Developer docs
The license for this meta-package is MIT; individual tools vary.
Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. It includes a collection of open-source tools to aid in our understanding of pathogen spread and evolution, especially in outbreak scenarios. These tools are designed to be used with a wide range of data sources and designed to be modular so they can be replaced with your own tooling when necessary.
- package nextstrain¶
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install nextstrain
and update with:
conda update nextstrain
or use the docker container:
docker pull quay.io/biocontainers/nextstrain:<tag>
(see nextstrain/tags for valid values for