recipe ngs-disambiguate

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

Homepage:

https://github.com/AstraZeneca-NGS/disambiguate

License:

MIT

Recipe:

/ngs-disambiguate/meta.yaml

package ngs-disambiguate

(downloads) docker_ngs-disambiguate

versions:
2018.05.03-9,  2018.05.03-8,  2018.05.03-7,  2018.05.03-6,  2018.05.03-5,  2018.05.03-4,  2018.05.03-3,  2018.05.03-2,  2018.05.03-1, 

2018.05.03-9,  2018.05.03-8,  2018.05.03-7,  2018.05.03-6,  2018.05.03-5,  2018.05.03-4,  2018.05.03-3,  2018.05.03-2,  2018.05.03-1,  2018.05.03-0,  2016.11.10-0,  1.0.0-0

depends bamtools:

>=2.5.2,<2.6.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ngs-disambiguate

and update with::

   mamba update ngs-disambiguate

To create a new environment, run:

mamba create --name myenvname ngs-disambiguate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ngs-disambiguate:<tag>

(see `ngs-disambiguate/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ngs-disambiguate/README.html)